PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC7811_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 152aa    MW: 18202.8 Da    PI: 9.6413
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC7811_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.65.1e-06628123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ C+k F r  nL+ H r H
  RrC7811_p1  6 FICEVCNKGFQREQNLQLHRRGH 28
                89*******************88 PP

2zf-C2H211.90.0006982104123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C++++   s++k H + +
  RrC7811_p1  82 FKCDKCPRCYAVESDYKAHSKIC 104
                 89*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.0E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121716.5E-6628IPR022755Zinc finger, double-stranded RNA binding
SuperFamilySSF576671.47E-8628No hitNo description
PROSITE profilePS5015710.99628IPR007087Zinc finger, C2H2
SMARTSM003550.0052628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355644777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.9E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.47E-877102No hitNo description
SMARTSM003559982102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MATYRFICEV CNKGFQREQN LQLHRRGHGL SYTLKQNSDE EVRRKVYVCP EPTCVYHDPS  60
RALGDLTGIK KHYSRKHGEK KFKCDKCPRC YAVESDYKAH SKICGTKEYR CVCASKKPYR  120
ELYGNGSSRW WKWWQTWLLR RCYSCSHSQP FW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894991e-117AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013694444.12e-67PREDICTED: protein indeterminate-domain 4, chloroplastic-like
RefseqXP_009149300.12e-67PREDICTED: zinc finger protein NUTCRACKER-like, partial
RefseqXP_006416997.15e-67hypothetical protein EUTSA_v10007538mg
SwissprotQ8GYC11e-67IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0D3CA655e-67A0A0D3CA65_BRAOL; Uncharacterized protein
TrEMBLM4EBP46e-69M4EBP4_BRARP; Uncharacterized protein
STRINGBra026203.1-P2e-68(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.17e-69indeterminate(ID)-domain 4